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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.13

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-08-14, 17:12 EDT based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/taeniamia_zosterophora/1st_sequencing_run/fq_fp1


        General Statistics

        Showing 339/339 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        Tzo-ABol_002-Ex1-2A-lcwgs-1-1
        9.7%
        39.2%
        98.3%
        93.9%
        Tzo-ABol_003-Ex1-3A-lcwgs-1-1
        10.3%
        39.3%
        98.2%
        90.9%
        Tzo-ABol_008-Ex1-8A-lcwgs-1-1
        10.1%
        38.9%
        98.0%
        89.2%
        Tzo-ABol_009-Ex1-9A-lcwgs-1-1
        9.9%
        41.9%
        97.8%
        86.5%
        Tzo-ABol_010-Ex1-10A-lcwgs-1-1
        10.0%
        39.3%
        98.3%
        94.7%
        Tzo-ABol_011-Ex1-11A-lcwgs-1-1
        0.8%
        39.4%
        94.6%
        81.6%
        Tzo-ABol_012-Ex1-12A-lcwgs-1-1
        8.8%
        38.3%
        97.9%
        93.5%
        Tzo-ABol_020-Ex1-8B-lcwgs-1-1
        10.2%
        38.8%
        98.1%
        92.9%
        Tzo-ABol_023-Ex1-11B-lcwgs-1-1
        9.7%
        38.5%
        98.0%
        89.7%
        Tzo-ABol_024-Ex1-12B-lcwgs-1-1
        0.9%
        39.5%
        95.4%
        79.9%
        Tzo-ABol_026-Ex1-2C-lcwgs-1-1
        9.5%
        38.3%
        98.3%
        92.9%
        Tzo-ABol_030-Ex1-6C-lcwgs-1-1
        9.0%
        38.9%
        98.0%
        92.6%
        Tzo-ABol_034-Ex1-10C-lcwgs-1-1
        8.9%
        39.0%
        97.6%
        91.7%
        Tzo-ABol_035-Ex1-11C-lcwgs-1-1
        7.6%
        38.5%
        96.6%
        92.2%
        Tzo-ABol_036-Ex1-12C-lcwgs-1-1
        9.9%
        40.7%
        97.7%
        92.4%
        Tzo-ABol_038-Ex1-2D-lcwgs-1-1
        10.0%
        39.4%
        97.7%
        90.2%
        Tzo-ABol_043-Ex1-7D-lcwgs-1-1
        8.5%
        39.1%
        98.1%
        95.9%
        Tzo-ABol_044-Ex1-8D-lcwgs-1-1
        9.9%
        43.0%
        97.2%
        91.2%
        Tzo-ABol_045-Ex1-9D-lcwgs-1-1
        8.6%
        39.2%
        97.7%
        96.3%
        Tzo-ABol_046-Ex1-10D-lcwgs-1-1
        7.8%
        40.1%
        97.7%
        96.4%
        Tzo-ABol_047-Ex1-11D-lcwgs-1-1
        9.6%
        39.5%
        97.9%
        89.9%
        Tzo-ABol_048-Ex1-12D-lcwgs-1-1
        8.7%
        38.3%
        97.9%
        90.9%
        Tzo-ABol_050-Ex1-2E-lcwgs-1-1
        9.1%
        39.8%
        97.9%
        93.1%
        Tzo-ABol_051-Ex1-3E-lcwgs-1-1
        10.4%
        39.5%
        98.0%
        95.4%
        Tzo-ABol_052-Ex1-4E-lcwgs-1-1
        8.7%
        39.1%
        97.9%
        96.2%
        Tzo-ABol_053-Ex1-5E-lcwgs-1-1
        10.6%
        38.5%
        98.0%
        94.7%
        Tzo-ABol_054-Ex1-6E-lcwgs-1-1
        9.8%
        40.3%
        96.9%
        90.0%
        Tzo-ABol_055-Ex1-7E-lcwgs-1-1
        9.0%
        38.8%
        98.0%
        92.7%
        Tzo-ABol_056-Ex1-8E-lcwgs-1-1
        9.1%
        38.9%
        97.7%
        93.6%
        Tzo-ABol_057-Ex1-9E-lcwgs-1-1
        10.0%
        39.6%
        97.9%
        91.6%
        Tzo-ABol_058-Ex1-10E-lcwgs-1-1
        8.3%
        38.3%
        97.7%
        94.2%
        Tzo-ABol_059-Ex1-11E-lcwgs-1-1
        8.7%
        38.6%
        97.8%
        92.8%
        Tzo-ABol_060-Ex1-12E-lcwgs-1-1
        9.6%
        38.9%
        98.1%
        94.1%
        Tzo-ABol_061-Ex1-1F-lcwgs-1-1
        9.3%
        40.0%
        98.0%
        96.7%
        Tzo-ABol_062-Ex1-2F-lcwgs-1-1
        10.7%
        40.1%
        96.9%
        97.8%
        Tzo-ABol_063-Ex1-3F-lcwgs-1-1
        2.1%
        39.1%
        96.4%
        90.8%
        Tzo-ABol_065-Ex1-5F-lcwgs-1-1
        9.6%
        39.7%
        97.3%
        95.1%
        Tzo-ABol_066-Ex1-6F-lcwgs-1-1
        8.5%
        39.6%
        97.1%
        90.1%
        Tzo-ABol_067-Ex1-7F-lcwgs-1-1
        9.2%
        39.0%
        97.9%
        96.1%
        Tzo-ABol_068-Ex1-8F-lcwgs-1-1
        10.4%
        41.6%
        97.7%
        92.1%
        Tzo-ABol_069-Ex1-9F-lcwgs-1-1
        9.1%
        39.0%
        97.8%
        94.5%
        Tzo-ABol_070-Ex1-10F-lcwgs-1-1
        8.8%
        38.7%
        97.9%
        93.6%
        Tzo-ABol_071-Ex1-11F-lcwgs-1-1
        9.1%
        38.5%
        98.0%
        94.7%
        Tzo-ABol_072-Ex1-12F-lcwgs-1-1
        10.0%
        38.7%
        98.1%
        92.6%
        Tzo-ABol_073-Ex1-1G-lcwgs-1-1
        7.9%
        39.3%
        97.9%
        94.8%
        Tzo-ABol_075-Ex1-3G-lcwgs-1-1
        10.7%
        39.9%
        98.2%
        97.6%
        Tzo-ABol_076-Ex1-4G-lcwgs-1-1
        9.9%
        40.7%
        98.4%
        98.5%
        Tzo-ABol_077-Ex1-5G-lcwgs-1-1
        9.2%
        38.5%
        98.1%
        92.1%
        Tzo-ABol_078-Ex1-6G-lcwgs-1-1
        8.5%
        38.3%
        97.6%
        92.0%
        Tzo-ABol_079-Ex1-7G-lcwgs-1-1
        8.8%
        38.1%
        97.7%
        91.0%
        Tzo-ABol_080-Ex1-8G-lcwgs-1-1
        10.4%
        38.4%
        97.9%
        91.0%
        Tzo-ABol_081-Ex1-9G-lcwgs-1-1
        9.0%
        38.9%
        97.7%
        92.0%
        Tzo-ABol_082-Ex1-10G-lcwgs-1-1
        8.9%
        43.1%
        96.9%
        91.2%
        Tzo-ABol_083-Ex1-11G-lcwgs-1-1
        9.3%
        39.2%
        98.0%
        91.8%
        Tzo-ABol_084-Ex1-12G-lcwgs-1-1
        9.4%
        38.6%
        98.1%
        94.7%
        Tzo-ABol_085-Ex1-1H-lcwgs-1-1
        9.0%
        39.5%
        98.0%
        96.9%
        Tzo-ABol_086-Ex1-2H-lcwgs-1-1
        8.9%
        42.8%
        97.7%
        94.3%
        Tzo-ABol_087-Ex1-3H-lcwgs-1-1
        9.7%
        39.0%
        98.1%
        96.3%
        Tzo-ABol_088-Ex1-4H-lcwgs-1-1
        8.8%
        40.6%
        97.1%
        94.3%
        Tzo-ABol_090-Ex1-6H-lcwgs-1-1
        8.9%
        41.8%
        97.9%
        97.6%
        Tzo-ABol_091-Ex1-7H-lcwgs-1-1
        9.1%
        39.3%
        98.1%
        93.7%
        Tzo-ABol_092-Ex1-8H-lcwgs-1-1
        9.5%
        39.6%
        98.2%
        93.7%
        Tzo-ABol_093-Ex1-9H-lcwgs-1-1
        8.8%
        39.1%
        97.7%
        89.0%
        Tzo-ABol_095-Ex1-11H-lcwgs-1-1
        8.7%
        39.4%
        97.9%
        89.8%
        Tzo-ABol_096-Ex1-12H-lcwgs-1-1
        9.6%
        39.3%
        98.2%
        92.0%
        Tzo-AMta_001-Ex1-5D-lcwgs-1-1
        9.5%
        42.5%
        93.0%
        97.0%
        Tzo-AMta_002-Ex1-5E-lcwgs-1-1
        10.2%
        40.7%
        93.7%
        95.5%
        Tzo-AMta_003-Ex1-5F-lcwgs-1-1
        11.5%
        42.8%
        94.6%
        95.5%
        Tzo-AMta_004-Ex1-5G-lcwgs-1-1
        10.0%
        42.1%
        95.4%
        96.2%
        Tzo-AMta_005-Ex1-5H-lcwgs-1-1
        10.1%
        40.8%
        96.4%
        96.3%
        Tzo-AMta_006-Ex1-1B-lcwgs-2-1
        8.8%
        42.1%
        95.6%
        98.7%
        Tzo-AMta_006-Ex1-6A-lcwgs-1-1
        11.9%
        40.2%
        98.2%
        97.5%
        Tzo-AMta_007-Ex1-6B-lcwgs-1-1
        10.8%
        41.7%
        97.1%
        96.8%
        Tzo-AMta_008-Ex1-6C-lcwgs-1-1
        10.8%
        40.8%
        97.6%
        97.7%
        Tzo-AMta_009-Ex1-6D-lcwgs-1-1
        10.1%
        40.2%
        97.6%
        96.8%
        Tzo-AMta_010-Ex1-6E-lcwgs-1-1
        10.2%
        40.1%
        96.6%
        97.0%
        Tzo-AMta_011-Ex1-6F-lcwgs-1-1
        5.4%
        40.1%
        96.2%
        93.8%
        Tzo-AMta_012-Ex1-6G-lcwgs-1-1
        9.8%
        41.0%
        97.1%
        95.8%
        Tzo-AMta_013-Ex1-6H-lcwgs-1-1
        9.7%
        40.5%
        96.8%
        97.1%
        Tzo-AMta_014-Ex1-7A-lcwgs-1-1
        12.0%
        39.2%
        98.2%
        96.7%
        Tzo-AMta_015-Ex1-7B-lcwgs-1-1
        11.5%
        38.8%
        97.5%
        95.8%
        Tzo-AMta_016-Ex1-7C-lcwgs-1-1
        10.8%
        40.8%
        97.9%
        97.5%
        Tzo-AMta_017-Ex1-7D-lcwgs-1-1
        10.6%
        42.1%
        96.8%
        96.9%
        Tzo-AMta_018-Ex1-7E-lcwgs-1-1
        9.8%
        39.2%
        95.5%
        97.6%
        Tzo-AMta_019-Ex1-7F-lcwgs-1-1
        10.4%
        39.4%
        97.4%
        97.0%
        Tzo-AMta_020-Ex1-7G-lcwgs-1-1
        9.8%
        40.0%
        97.5%
        97.4%
        Tzo-AMta_021-Ex1-7H-lcwgs-1-1
        10.2%
        40.0%
        96.7%
        97.8%
        Tzo-AMta_022-Ex1-8A-lcwgs-1-1
        11.8%
        39.5%
        97.8%
        96.7%
        Tzo-AMta_023-Ex1-8B-lcwgs-1-1
        9.6%
        38.6%
        95.6%
        97.3%
        Tzo-AMta_024-Ex1-8C-lcwgs-1-1
        9.7%
        39.6%
        94.8%
        96.9%
        Tzo-AMta_025-Ex1-1E-lcwgs-2-1
        10.0%
        40.7%
        97.3%
        98.5%
        Tzo-AMta_025-Ex1-8D-lcwgs-1-1
        10.0%
        42.2%
        95.2%
        98.9%
        Tzo-AMta_026-Ex1-8E-lcwgs-1-1
        9.2%
        39.9%
        95.3%
        97.4%
        Tzo-AMta_027-Ex1-1C-lcwgs-2-1
        8.4%
        42.7%
        94.1%
        98.6%
        Tzo-AMta_027-Ex1-8F-lcwgs-1-1
        9.9%
        42.6%
        96.7%
        99.2%
        Tzo-AMta_028-Ex1-8G-lcwgs-1-1
        10.4%
        41.0%
        95.7%
        98.8%
        Tzo-AMta_029-Ex1-8H-lcwgs-1-1
        10.0%
        42.1%
        96.7%
        99.2%
        Tzo-AMta_030-Ex1-9A-lcwgs-1-1
        12.2%
        41.2%
        97.2%
        99.0%
        Tzo-AMta_031-Ex1-9B-lcwgs-1-1
        11.4%
        39.3%
        97.5%
        97.8%
        Tzo-AMvi_001-Ex1-1A-lcwgs-1-1
        8.5%
        38.2%
        97.0%
        86.7%
        Tzo-AMvi_002-Ex1-1E-lcwgs-1-1
        8.2%
        38.8%
        97.5%
        90.7%
        Tzo-AMvi_003-Ex1-2A-lcwgs-1-1
        9.5%
        36.4%
        97.3%
        86.2%
        Tzo-AMvi_004-Ex1-2E-lcwgs-1-1
        9.5%
        37.4%
        97.7%
        85.2%
        Tzo-AMvi_005-Ex1-3A-lcwgs-1-1
        9.4%
        37.6%
        97.7%
        83.5%
        Tzo-AMvi_006-Ex1-1A-lcwgs-2-1
        12.4%
        51.0%
        91.5%
        58.8%
        Tzo-AMvi_007-Ex1-4A-lcwgs-1-1
        8.5%
        37.1%
        97.2%
        82.1%
        Tzo-AMvi_008-Ex1-1B-lcwgs-2-1
        10.5%
        40.4%
        96.3%
        68.2%
        Tzo-AMvi_009-Ex1-5A-lcwgs-1-1
        7.5%
        37.2%
        96.7%
        86.8%
        Tzo-AMvi_010-Ex1-5E-lcwgs-1-1
        9.0%
        39.1%
        97.2%
        83.3%
        Tzo-AMvi_011-Ex1-6A-lcwgs-1-1
        3.6%
        38.7%
        94.8%
        85.7%
        Tzo-AMvi_012-Ex1-6E-lcwgs-1-1
        8.1%
        38.4%
        97.9%
        84.7%
        Tzo-AMvi_013-Ex1-1B-lcwgs-1-1
        7.7%
        39.0%
        96.8%
        85.9%
        Tzo-AMvi_014-Ex1-1C-lcwgs-2-1
        0.6%
        40.8%
        94.8%
        72.3%
        Tzo-AMvi_015-Ex1-2B-lcwgs-1-1
        9.8%
        38.7%
        97.0%
        78.7%
        Tzo-AMvi_016-Ex1-2F-lcwgs-1-1
        8.3%
        40.1%
        96.5%
        81.6%
        Tzo-AMvi_017-Ex1-3B-lcwgs-1-1
        9.5%
        38.3%
        97.0%
        81.6%
        Tzo-AMvi_018-Ex1-3F-lcwgs-1-1
        10.1%
        40.3%
        96.6%
        83.2%
        Tzo-AMvi_019-Ex1-1D-lcwgs-2-1
        0.5%
        40.5%
        95.2%
        74.8%
        Tzo-AMvi_020-Ex1-4F-lcwgs-1-1
        9.2%
        39.3%
        97.0%
        80.1%
        Tzo-AMvi_021-Ex1-1E-lcwgs-2-1
        11.5%
        43.0%
        95.9%
        63.3%
        Tzo-AMvi_022-Ex1-5F-lcwgs-1-1
        9.9%
        39.8%
        96.8%
        71.7%
        Tzo-AMvi_023-Ex1-6B-lcwgs-1-1
        7.3%
        38.9%
        96.8%
        82.3%
        Tzo-AMvi_024-Ex1-6F-lcwgs-1-1
        8.0%
        38.5%
        96.9%
        80.9%
        Tzo-AMvi_025-Ex1-1C-lcwgs-1-1
        8.4%
        37.7%
        97.7%
        88.5%
        Tzo-AMvi_026-Ex1-1G-lcwgs-1-1
        8.6%
        39.3%
        97.3%
        89.6%
        Tzo-AMvi_027-Ex1-2C-lcwgs-1-1
        8.6%
        38.8%
        97.6%
        84.3%
        Tzo-AMvi_028-Ex1-2G-lcwgs-1-1
        8.3%
        38.2%
        97.4%
        88.4%
        Tzo-AMvi_029-Ex1-3C-lcwgs-1-1
        7.2%
        38.0%
        97.8%
        90.9%
        Tzo-AMvi_030-Ex1-3G-lcwgs-1-1
        10.4%
        37.5%
        97.9%
        83.9%
        Tzo-AMvi_031-Ex1-4C-lcwgs-1-1
        7.2%
        37.6%
        96.9%
        88.7%
        Tzo-AMvi_032-Ex1-4G-lcwgs-1-1
        9.1%
        40.4%
        97.0%
        88.7%
        Tzo-AMvi_033-Ex1-5C-lcwgs-1-1
        9.6%
        39.8%
        97.0%
        73.8%
        Tzo-AMvi_034-Ex1-5G-lcwgs-1-1
        8.6%
        37.6%
        97.8%
        86.9%
        Tzo-AMvi_035-Ex1-6C-lcwgs-1-1
        8.1%
        39.1%
        97.1%
        82.7%
        Tzo-AMvi_036-Ex1-6G-lcwgs-1-1
        8.5%
        41.7%
        96.5%
        80.5%
        Tzo-AMvi_037-Ex1-1D-lcwgs-1-1
        5.5%
        38.8%
        96.1%
        87.9%
        Tzo-AMvi_038-Ex1-1H-lcwgs-1-1
        8.6%
        38.4%
        97.3%
        84.1%
        Tzo-AMvi_039-Ex1-2D-lcwgs-1-1
        7.3%
        38.9%
        97.2%
        85.8%
        Tzo-AMvi_040-Ex1-2H-lcwgs-1-1
        7.9%
        38.2%
        97.4%
        88.7%
        Tzo-AMvi_041-Ex1-3D-lcwgs-1-1
        1.1%
        39.7%
        96.7%
        83.1%
        Tzo-AMvi_042-Ex1-3H-lcwgs-1-1
        8.5%
        41.1%
        96.5%
        83.3%
        Tzo-AMvi_043-Ex1-4D-lcwgs-1-1
        7.1%
        37.7%
        97.3%
        86.8%
        Tzo-AMvi_044-Ex1-4H-lcwgs-1-1
        7.3%
        37.5%
        97.1%
        85.4%
        Tzo-AMvi_045-Ex1-5D-lcwgs-1-1
        8.9%
        38.0%
        97.4%
        85.4%
        Tzo-AMvi_046-Ex1-5H-lcwgs-1-1
        9.3%
        39.9%
        97.2%
        83.4%
        Tzo-AMvi_047-Ex1-6D-lcwgs-1-1
        8.6%
        38.5%
        97.8%
        84.4%
        Tzo-AMvi_048-Ex1-6H-lcwgs-1-1
        8.3%
        40.6%
        95.9%
        83.9%
        Tzo-CMal_001-Ex1-3F-lcwgs-1-1
        9.3%
        41.2%
        95.4%
        49.7%
        Tzo-CMal_002-Ex1-3G-lcwgs-1-1
        9.6%
        41.3%
        95.1%
        31.6%
        Tzo-CMal_003-Ex1-3H-lcwgs-1-1
        9.5%
        40.9%
        93.8%
        26.2%
        Tzo-CMal_004-Ex1-4A-lcwgs-1-1
        10.1%
        40.7%
        94.8%
        23.4%
        Tzo-CMal_005-Ex1-4B-lcwgs-1-1
        8.9%
        41.0%
        95.5%
        45.7%
        Tzo-CMal_006-Ex1-4C-lcwgs-1-1
        9.1%
        41.1%
        95.3%
        40.1%
        Tzo-CMal_007-Ex1-4D-lcwgs-1-1
        8.8%
        41.1%
        95.4%
        42.5%
        Tzo-CMal_008-Ex1-4E-lcwgs-1-1
        9.2%
        41.1%
        95.1%
        39.4%
        Tzo-CMal_009-Ex1-4F-lcwgs-1-1
        8.9%
        41.3%
        95.0%
        43.8%
        Tzo-CMal_010-Ex1-4G-lcwgs-1-1
        9.1%
        40.9%
        94.7%
        32.3%
        Tzo-CMal_011-Ex1-4H-lcwgs-1-1
        9.3%
        41.0%
        94.5%
        31.1%
        Tzo-CMal_012-Ex1-5A-lcwgs-1-1
        10.1%
        41.1%
        95.2%
        28.7%
        Tzo-CMal_013-Ex1-5B-lcwgs-1-1
        9.2%
        41.0%
        94.7%
        39.1%
        Tzo-CMal_014-Ex1-5C-lcwgs-1-1
        9.3%
        40.9%
        95.1%
        37.5%
        Tzo-CMal_015-Ex1-5D-lcwgs-1-1
        8.8%
        41.3%
        95.0%
        42.0%
        Tzo-CMal_016-Ex1-5E-lcwgs-1-1
        8.8%
        41.4%
        94.0%
        47.5%
        Tzo-CMal_017-Ex1-5F-lcwgs-1-1
        9.0%
        41.2%
        95.2%
        47.9%
        Tzo-CMal_018-Ex1-5G-lcwgs-1-1
        8.6%
        41.3%
        95.9%
        54.8%
        Tzo-CMal_019-Ex1-5H-lcwgs-1-1
        8.9%
        41.0%
        94.2%
        31.9%
        Tzo-CMal_020-Ex1-6A-lcwgs-1-1
        9.5%
        41.2%
        95.0%
        35.1%
        Tzo-CMal_021-Ex1-6B-lcwgs-1-1
        8.5%
        41.2%
        95.4%
        47.3%
        Tzo-CMal_022-Ex1-6C-lcwgs-1-1
        9.2%
        41.1%
        94.7%
        33.9%
        Tzo-CMal_023-Ex1-6D-lcwgs-1-1
        8.3%
        41.3%
        95.1%
        49.6%
        Tzo-CMal_024-Ex1-6E-lcwgs-1-1
        0.8%
        41.0%
        94.8%
        80.0%
        Tzo-CMal_025-Ex1-6F-lcwgs-1-1
        8.4%
        41.4%
        95.4%
        54.5%
        Tzo-CMal_026-Ex1-6G-lcwgs-1-1
        8.3%
        41.5%
        94.9%
        49.2%
        Tzo-CMal_027-Ex1-6H-lcwgs-1-1
        8.1%
        41.5%
        94.1%
        45.3%
        Tzo-CMal_028-Ex1-7A-lcwgs-1-1
        9.5%
        41.7%
        95.5%
        36.3%
        Tzo-CMal_029-Ex1-7B-lcwgs-1-1
        8.3%
        41.5%
        95.5%
        54.9%
        Tzo-CMal_030-Ex1-7C-lcwgs-1-1
        8.9%
        40.9%
        94.9%
        39.4%
        Tzo-CMal_031-Ex1-7D-lcwgs-1-1
        8.4%
        41.3%
        95.1%
        50.7%
        Tzo-CMal_032-Ex1-7E-lcwgs-1-1
        8.4%
        41.5%
        94.6%
        55.5%
        Tzo-CMal_033-Ex1-7F-lcwgs-1-1
        8.2%
        41.6%
        95.8%
        61.7%
        Tzo-CMal_034-Ex1-7G-lcwgs-1-1
        8.1%
        41.5%
        93.4%
        59.5%
        Tzo-CMal_035-Ex1-7H-lcwgs-1-1
        8.6%
        41.5%
        93.8%
        40.6%
        Tzo-CMal_036-Ex1-8A-lcwgs-1-1
        9.1%
        41.1%
        95.4%
        38.4%
        Tzo-CMal_037-Ex1-8B-lcwgs-1-1
        8.6%
        41.5%
        95.6%
        53.1%
        Tzo-CMal_038-Ex1-8C-lcwgs-1-1
        8.4%
        41.3%
        95.8%
        54.7%
        Tzo-CMal_039-Ex1-8D-lcwgs-1-1
        1.4%
        40.7%
        94.1%
        80.1%
        Tzo-CMal_040-Ex1-8E-lcwgs-1-1
        8.8%
        41.4%
        95.5%
        47.3%
        Tzo-CMal_041-Ex1-8F-lcwgs-1-1
        0.6%
        40.8%
        93.5%
        82.9%
        Tzo-CMal_042-Ex1-8G-lcwgs-1-1
        8.0%
        41.5%
        95.1%
        51.7%
        Tzo-CMal_043-Ex1-8H-lcwgs-1-1
        8.3%
        41.0%
        93.1%
        30.7%
        Tzo-CMal_044-Ex1-9A-lcwgs-1-1
        10.9%
        40.9%
        95.0%
        31.8%
        Tzo-CMal_045-Ex1-9B-lcwgs-1-1
        9.4%
        40.6%
        94.7%
        31.8%
        Tzo-CMal_046-Ex1-9C-lcwgs-1-1
        10.7%
        41.0%
        95.0%
        34.5%
        Tzo-CMal_047-Ex1-9D-lcwgs-1-1
        9.7%
        41.2%
        95.1%
        49.6%
        Tzo-CMal_048-Ex1-9E-lcwgs-1-1
        0.6%
        40.4%
        94.9%
        74.4%
        Tzo-CMal_049-Ex1-9F-lcwgs-1-1
        9.6%
        41.6%
        94.6%
        49.5%
        Tzo-CMal_050-Ex1-9G-lcwgs-1-1
        6.2%
        41.0%
        94.7%
        59.2%
        Tzo-CMal_051-Ex1-9H-lcwgs-1-1
        9.9%
        41.0%
        93.7%
        34.1%
        Tzo-CMal_052-Ex1-10A-lcwgs-1-1
        8.6%
        41.0%
        93.8%
        26.7%
        Tzo-CMal_053-Ex1-10B-lcwgs-1-1
        7.9%
        41.2%
        93.6%
        33.8%
        Tzo-CMal_054-Ex1-10C-lcwgs-1-1
        7.9%
        41.0%
        91.4%
        38.0%
        Tzo-CMal_055-Ex1-10D-lcwgs-1-1
        7.6%
        41.1%
        93.9%
        36.5%
        Tzo-CMal_056-Ex1-10E-lcwgs-1-1
        7.9%
        41.3%
        92.4%
        35.2%
        Tzo-CMal_057-Ex1-10F-lcwgs-1-1
        7.8%
        41.6%
        91.0%
        37.4%
        Tzo-CMal_058-Ex1-10G-lcwgs-1-1
        7.6%
        41.2%
        93.6%
        37.3%
        Tzo-CMal_059-Ex1-10H-lcwgs-1-1
        6.5%
        41.1%
        90.5%
        43.2%
        Tzo-CMal_060-Ex1-11A-lcwgs-1-1
        9.2%
        41.0%
        95.4%
        35.7%
        Tzo-CMal_061-Ex1-11B-lcwgs-1-1
        9.3%
        40.7%
        94.7%
        25.6%
        Tzo-CMal_062-Ex1-11C-lcwgs-1-1
        8.9%
        41.1%
        96.0%
        48.1%
        Tzo-CMal_063-Ex1-11D-lcwgs-1-1
        8.7%
        40.9%
        95.8%
        39.9%
        Tzo-CMal_064-Ex1-11E-lcwgs-1-1
        8.1%
        41.2%
        93.8%
        31.2%
        Tzo-CMta_001-Ex1-9A-lcwgs-1-1
        9.7%
        42.2%
        93.2%
        62.4%
        Tzo-CMta_002-Ex1-9B-lcwgs-1-1
        9.8%
        41.4%
        95.2%
        60.0%
        Tzo-CMta_003-Ex1-9C-lcwgs-1-1
        0.9%
        39.6%
        93.9%
        82.1%
        Tzo-CMta_004-Ex1-9D-lcwgs-1-1
        1.7%
        40.4%
        95.5%
        77.2%
        Tzo-CMta_005-Ex1-9E-lcwgs-1-1
        8.5%
        41.9%
        95.0%
        63.1%
        Tzo-CMta_006-Ex1-9F-lcwgs-1-1
        8.6%
        42.0%
        94.6%
        49.7%
        Tzo-CMta_007-Ex1-9G-lcwgs-1-1
        0.2%
        39.3%
        91.2%
        87.3%
        Tzo-CMta_008-Ex1-9H-lcwgs-1-1
        1.9%
        39.7%
        94.3%
        80.2%
        Tzo-CMta_009-Ex1-10A-lcwgs-1-1
        8.0%
        41.8%
        94.6%
        50.0%
        Tzo-CMta_010-Ex1-10B-lcwgs-1-1
        7.0%
        41.5%
        93.8%
        61.1%
        Tzo-CMta_011-Ex1-10C-lcwgs-1-1
        1.7%
        40.6%
        93.8%
        55.8%
        Tzo-CMta_012-Ex1-10D-lcwgs-1-1
        7.5%
        41.7%
        91.5%
        39.5%
        Tzo-CMta_013-Ex1-10E-lcwgs-1-1
        0.3%
        39.7%
        89.5%
        52.7%
        Tzo-CMta_014-Ex1-10F-lcwgs-1-1
        7.6%
        42.0%
        90.7%
        46.8%
        Tzo-CMta_015-Ex1-10G-lcwgs-1-1
        0.2%
        40.3%
        92.0%
        55.6%
        Tzo-CMta_016-Ex1-10H-lcwgs-1-1
        7.7%
        40.3%
        91.2%
        44.0%
        Tzo-CMta_017-Ex1-11A-lcwgs-1-1
        9.2%
        41.4%
        96.2%
        51.7%
        Tzo-CMta_018-Ex1-11B-lcwgs-1-1
        1.4%
        40.2%
        86.4%
        49.6%
        Tzo-CMta_019-Ex1-11C-lcwgs-1-1
        6.7%
        41.8%
        93.2%
        62.8%
        Tzo-CMta_020-Ex1-11D-lcwgs-1-1
        8.3%
        41.5%
        93.6%
        47.9%
        Tzo-CMta_021-Ex1-11E-lcwgs-1-1
        8.2%
        42.1%
        90.4%
        58.9%
        Tzo-CMta_022-Ex1-11F-lcwgs-1-1
        8.4%
        42.2%
        92.0%
        54.6%
        Tzo-CMta_023-Ex1-11G-lcwgs-1-1
        0.8%
        40.0%
        93.8%
        59.1%
        Tzo-CMta_024-Ex1-11H-lcwgs-1-1
        8.8%
        41.1%
        95.7%
        49.2%
        Tzo-CMta_025-Ex1-12A-lcwgs-1-1
        8.2%
        41.7%
        91.9%
        61.4%
        Tzo-CMta_026-Ex1-12B-lcwgs-1-1
        7.2%
        42.0%
        84.8%
        72.0%
        Tzo-CMta_027-Ex1-12C-lcwgs-1-1
        8.7%
        41.4%
        94.0%
        54.1%
        Tzo-CMta_028-Ex1-12D-lcwgs-1-1
        6.6%
        41.6%
        91.8%
        57.2%
        Tzo-CMta_029-Ex1-12E-lcwgs-1-1
        8.5%
        41.8%
        93.8%
        56.5%
        Tzo-CMta_030-Ex1-12F-lcwgs-1-1
        7.5%
        42.3%
        91.6%
        61.2%
        Tzo-CMta_031-Ex1-12G-lcwgs-1-1
        7.7%
        42.3%
        90.1%
        61.0%
        Tzo-CMta_032-Ex1-12H-lcwgs-1-1
        8.0%
        41.6%
        95.8%
        63.2%
        Tzo-CMta_033-Ex1-1A-lcwgs-1-1
        8.8%
        41.5%
        96.0%
        54.4%
        Tzo-CMta_034-Ex1-1B-lcwgs-1-1
        8.9%
        41.8%
        95.5%
        59.3%
        Tzo-CMta_035-Ex1-1C-lcwgs-1-1
        8.1%
        41.2%
        96.3%
        55.5%
        Tzo-CMta_036-Ex1-1D-lcwgs-1-1
        10.0%
        41.5%
        95.7%
        42.5%
        Tzo-CMta_037-Ex1-1E-lcwgs-1-1
        0.5%
        40.2%
        95.4%
        70.0%
        Tzo-CMta_038-Ex1-1F-lcwgs-1-1
        1.2%
        40.4%
        94.7%
        69.4%
        Tzo-CMta_039-Ex1-1G-lcwgs-1-1
        9.8%
        40.7%
        96.3%
        45.7%
        Tzo-CMta_040-Ex1-1H-lcwgs-1-1
        9.1%
        40.8%
        96.6%
        56.9%
        Tzo-CMta_041-Ex1-2A-lcwgs-1-1
        7.2%
        41.4%
        95.0%
        44.4%
        Tzo-CMta_042-Ex1-2B-lcwgs-1-1
        8.5%
        40.9%
        96.0%
        48.7%
        Tzo-CMta_043-Ex1-2C-lcwgs-1-1
        8.2%
        40.9%
        96.4%
        49.3%
        Tzo-CMta_044-Ex1-2D-lcwgs-1-1
        8.4%
        41.2%
        95.9%
        39.2%
        Tzo-CMta_045-Ex1-2E-lcwgs-1-1
        8.7%
        41.4%
        96.1%
        52.7%
        Tzo-CMta_046-Ex1-2F-lcwgs-1-1
        3.1%
        40.7%
        95.5%
        59.0%
        Tzo-CMta_047-Ex1-2G-lcwgs-1-1
        0.6%
        40.1%
        95.4%
        67.6%
        Tzo-CMta_048-Ex1-2H-lcwgs-1-1
        8.4%
        41.3%
        96.1%
        54.5%
        Tzo-CMta_049-Ex1-3A-lcwgs-1-1
        1.1%
        40.5%
        95.1%
        60.7%
        Tzo-CMta_050-Ex1-3B-lcwgs-1-1
        0.5%
        40.3%
        92.6%
        55.2%
        Tzo-CMta_051-Ex1-3C-lcwgs-1-1
        9.3%
        41.1%
        96.1%
        49.8%
        Tzo-CMta_052-Ex1-3D-lcwgs-1-1
        0.7%
        40.7%
        93.9%
        60.7%
        Tzo-CMta_053-Ex1-3E-lcwgs-1-1
        9.8%
        41.3%
        96.2%
        46.2%
        Tzo-CMta_054-Ex1-3F-lcwgs-1-1
        0.7%
        40.5%
        94.4%
        68.6%
        Tzo-CMta_055-Ex1-3G-lcwgs-1-1
        9.6%
        41.4%
        96.3%
        51.2%
        Tzo-CMta_056-Ex1-3H-lcwgs-1-1
        8.2%
        41.5%
        96.5%
        69.4%
        Tzo-CMta_057-Ex1-4A-lcwgs-1-1
        0.6%
        40.4%
        92.2%
        59.3%
        Tzo-CMta_058-Ex1-4B-lcwgs-1-1
        8.2%
        40.9%
        95.9%
        50.8%
        Tzo-CMta_059-Ex1-4C-lcwgs-1-1
        8.6%
        41.4%
        96.1%
        56.3%
        Tzo-CMta_060-Ex1-4D-lcwgs-1-1
        8.6%
        41.4%
        95.6%
        48.0%
        Tzo-CMta_061-Ex1-4E-lcwgs-1-1
        6.9%
        41.3%
        95.4%
        57.0%
        Tzo-CMta_062-Ex1-4F-lcwgs-1-1
        9.0%
        41.4%
        96.1%
        56.7%
        Tzo-CMta_063-Ex1-4G-lcwgs-1-1
        8.5%
        41.1%
        96.3%
        51.3%
        Tzo-CMta_064-Ex1-4H-lcwgs-1-1
        7.0%
        41.2%
        96.0%
        56.5%
        Tzo-CMvi_006-Ex1-7B-lcwgs-1-1
        10.4%
        40.4%
        95.3%
        26.2%
        Tzo-CMvi_007-Ex1-8E-lcwgs-1-1
        10.0%
        40.5%
        94.7%
        24.7%
        Tzo-CMvi_011-Ex1-5G-lcwgs-1-1
        10.9%
        40.1%
        95.3%
        25.0%
        Tzo-CMvi_012-Ex1-1G-lcwgs-1-1
        9.3%
        40.0%
        95.8%
        45.9%
        Tzo-CMvi_013-Ex1-2B-lcwgs-1-1
        9.7%
        40.0%
        94.8%
        22.4%
        Tzo-CMvi_015-Ex1-2F-lcwgs-1-1
        10.5%
        40.4%
        94.2%
        18.4%
        Tzo-CMvi_016-Ex1-1D-lcwgs-1-1
        8.8%
        40.3%
        95.9%
        38.5%
        Tzo-CMvi_018-Ex1-1F-lcwgs-2-1
        9.2%
        41.5%
        89.9%
        15.7%
        Tzo-CMvi_019-Ex1-1G-lcwgs-2-1
        0.4%
        40.8%
        94.4%
        72.8%
        Tzo-CMvi_020-Ex1-7D-lcwgs-1-1
        9.6%
        41.2%
        95.1%
        25.4%
        Tzo-CMvi_027-Ex1-1H-lcwgs-2-1
        0.8%
        40.9%
        94.5%
        72.5%
        Tzo-CMvi_028-Ex1-2A-lcwgs-2-1
        8.0%
        40.8%
        90.0%
        27.8%
        Tzo-CMvi_029-Ex1-3C-lcwgs-1-1
        10.4%
        40.4%
        94.5%
        21.0%
        Tzo-CMvi_030-Ex1-2H-lcwgs-1-1
        10.6%
        40.3%
        94.6%
        20.0%
        Tzo-CMvi_031-Ex1-2B-lcwgs-2-1
        8.7%
        40.6%
        91.7%
        27.2%
        Tzo-CMvi_032-Ex1-2C-lcwgs-2-1
        8.7%
        40.9%
        91.4%
        25.0%
        Tzo-CMvi_033-Ex1-2D-lcwgs-2-1
        5.0%
        40.6%
        91.6%
        42.0%
        Tzo-CMvi_034-Ex1-2E-lcwgs-2-1
        0.5%
        40.4%
        93.6%
        75.6%
        Tzo-CMvi_035-Ex1-2F-lcwgs-2-1
        8.2%
        41.7%
        88.4%
        19.1%
        Tzo-CMvi_038-Ex1-6B-lcwgs-1-1
        10.9%
        39.6%
        95.3%
        27.1%
        Tzo-CMvi_040-Ex1-2G-lcwgs-2-1
        0.5%
        40.3%
        94.0%
        72.1%
        Tzo-CMvi_041-Ex1-4D-lcwgs-1-1
        8.8%
        40.1%
        95.0%
        28.6%
        Tzo-CMvi_042-Ex1-2H-lcwgs-2-1
        8.5%
        42.9%
        86.2%
        23.0%
        Tzo-CMvi_044-Ex1-3A-lcwgs-2-1
        9.1%
        41.1%
        91.7%
        21.4%
        Tzo-CMvi_045-Ex1-8B-lcwgs-1-1
        10.3%
        40.6%
        93.7%
        16.4%
        Tzo-CMvi_046-Ex1-6E-lcwgs-1-1
        11.7%
        39.8%
        94.9%
        25.9%
        Tzo-CMvi_047-Ex1-1F-lcwgs-1-1
        9.7%
        40.1%
        96.1%
        40.7%
        Tzo-CMvi_048-Ex1-2A-lcwgs-1-1
        9.7%
        40.2%
        95.1%
        26.2%
        Tzo-CMvi_049-Ex1-5B-lcwgs-1-1
        10.2%
        40.1%
        94.7%
        21.2%
        Tzo-CMvi_050-Ex1-3B-lcwgs-2-1
        7.2%
        40.6%
        92.4%
        32.2%
        Tzo-CMvi_051-Ex1-6H-lcwgs-1-1
        11.1%
        40.0%
        95.4%
        26.1%
        Tzo-CMvi_052-Ex1-7E-lcwgs-1-1
        9.3%
        40.4%
        95.5%
        30.9%
        Tzo-CMvi_053-Ex1-3C-lcwgs-2-1
        6.0%
        40.8%
        94.2%
        37.2%
        Tzo-CMvi_054-Ex1-3D-lcwgs-2-1
        8.5%
        40.7%
        89.4%
        27.2%
        Tzo-CMvi_057-Ex1-1H-lcwgs-1-1
        9.2%
        40.3%
        94.6%
        33.2%
        Tzo-CMvi_058-Ex1-3E-lcwgs-2-1
        9.2%
        40.8%
        91.4%
        24.3%
        Tzo-CMvi_061-Ex1-3F-lcwgs-2-1
        9.6%
        41.6%
        89.7%
        15.4%
        Tzo-CMvi_062-Ex1-3G-lcwgs-2-1
        8.5%
        40.9%
        89.4%
        19.9%
        Tzo-CMvi_063-Ex1-7A-lcwgs-1-1
        9.1%
        40.4%
        95.4%
        29.7%
        Tzo-CMvi_064-Ex1-3A-lcwgs-1-1
        10.0%
        40.0%
        94.3%
        20.5%
        Tzo-CMvi_065-Ex1-1E-lcwgs-1-1
        9.0%
        39.9%
        95.6%
        34.1%
        Tzo-CMvi_066-Ex1-5F-lcwgs-1-1
        10.9%
        40.2%
        95.0%
        22.4%
        Tzo-CMvi_067-Ex1-6A-lcwgs-1-1
        12.0%
        40.3%
        95.2%
        25.3%
        Tzo-CMvi_068-Ex1-6F-lcwgs-1-1
        11.4%
        39.8%
        95.2%
        27.0%
        Tzo-CMvi_069-Ex1-7G-lcwgs-1-1
        9.0%
        40.2%
        95.5%
        27.9%
        Tzo-CMvi_070-Ex1-3H-lcwgs-2-1
        0.3%
        39.7%
        94.1%
        73.4%
        Tzo-CMvi_071-Ex1-4A-lcwgs-2-1
        8.3%
        40.8%
        91.3%
        30.2%
        Tzo-CMvi_075-Ex1-3D-lcwgs-1-1
        10.3%
        40.1%
        94.1%
        19.6%
        Tzo-CMvi_076-Ex1-5A-lcwgs-1-1
        10.4%
        40.2%
        94.6%
        20.3%
        Tzo-CMvi_077-Ex1-6D-lcwgs-1-1
        11.8%
        39.8%
        95.1%
        23.4%
        Tzo-CMvi_078-Ex1-4B-lcwgs-2-1
        9.9%
        40.7%
        92.6%
        23.2%
        Tzo-CMvi_079-Ex1-7C-lcwgs-1-1
        8.8%
        40.3%
        94.8%
        24.6%
        Tzo-CMvi_080-Ex1-4C-lcwgs-2-1
        9.5%
        40.4%
        92.7%
        22.8%
        Tzo-CMvi_081-Ex1-4D-lcwgs-2-1
        9.4%
        40.7%
        92.8%
        23.9%
        Tzo-CMvi_082-Ex1-6C-lcwgs-1-1
        11.9%
        39.8%
        95.3%
        26.2%
        Tzo-CMvi_083-Ex1-4E-lcwgs-2-1
        9.4%
        40.5%
        92.8%
        37.6%
        Tzo-CMvi_087-Ex1-2D-lcwgs-1-1
        9.8%
        40.3%
        94.3%
        19.1%
        Tzo-CMvi_088-Ex1-4F-lcwgs-2-1
        9.6%
        40.6%
        91.4%
        19.6%
        Tzo-CMvi_089-Ex1-5D-lcwgs-1-1
        11.8%
        40.0%
        94.9%
        25.5%
        Tzo-CMvi_090-Ex1-3F-lcwgs-1-1
        10.7%
        39.9%
        96.1%
        44.0%
        Tzo-CMvi_091-Ex1-2C-lcwgs-1-1
        10.1%
        40.1%
        94.9%
        20.9%
        Tzo-CMvi_092-Ex1-4G-lcwgs-2-1
        9.1%
        42.1%
        90.4%
        20.1%
        Tzo-CMvi_093-Ex1-4H-lcwgs-2-1
        8.5%
        40.2%
        89.8%
        32.2%
        Tzo-CMvi_094-Ex1-8C-lcwgs-1-1
        10.5%
        40.4%
        94.7%
        23.2%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Duplication Rates

        Duplication rates of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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